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User guide
eNanoMapper public database

https://enanomapper.adma.ai

Portal

  • The Enanomapper database is publicly accessible.

  • Click on ENANOMAPPER icon to go to the ENANOMAPPER database main project page

  • Click on ENANOMAPPER icon to go to the ENANOMAPPER database main project page

Main project page

On the main page there are several links to the Search, Template Wizard, User guide (this page), etc.

main

Click on the Search link to go to the Search page

Search page

  • On the search page there is a search box on the top right , a summary panel on the left and the results are shown at the main panel.

  • The database includes results from multiple sources.

main

There are several summaries at the left panel:

  • Project
  • Study providers
  • Nanomaterial type
  • Nanomaterials
  • Protocols
  • Protocol annotation
  • Method
  • Method annotation
  • P-Chem
  • Tox
  • Ecotox
  • Cell
  • Experiment year
  • References
  • Endpoint
  • Endpoint annotation
  • Release

Every panel is expandable and shows the types of elements found for the particular query

Expand the Projects panel and click on . This will filter the results and only data generated by project will be shown.

search

The filters can be combined.

Expand the Nanomaterial type panel and select . These are ontology terms assigned to each material , e.g. [](https://bioportal.bioontology.org/ontologies/ENM/?p=classes&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2Fnpo%23undefined)

filter1

The panels show the types and counts of elements found for the particular query

i.e, the project and materials in this case.

The Methods panel shown indicate there is data for measured by these methods. The Method annotation panel contains the ontology terms denoting the same methods.

filter2

Exploring the data

Per material - click the Material and Study details link for particular material

study

Export data for all query results - Export tab

Compact summary report

  • select Compact data report from the dropdown menu, click on XLSX icon and finally click on Download filtered entries as XLSX

export_compact

The report is an Excel file

export_compact_results

  • Try exporting the same data into different report layouts (select from the dropdown menu).

Data export

Select the XLSX icon and click on Download filtered entries as XLSX

export_tsv

The result is an Excel spreadsheet (.XSLX )

export_tsv_results

Predefined queries

predefined queries

Select `` and click Apply. This will change the active query and will select .

predefined queries results

This query could be further refined using the widgets at the left, and data exported as described.

Search by ontology terms

OBI_0302736 (comet assay) is a term defined in Ontology for Biomedical Investigations (OBI) BioPortal link

pontology query

Summary

  • Various types of graphical summaries are available at the Dashboard project page

  • Download as image (SVG, PNG) or Excel files

Programmatic access (Application Programming Interface - API)

API documentation

apidocs

eNanoMapper client libraries

Jupyter notebooks

https://github.com/ideaconsult/notebooks-ambit/blob/master/enanomapper/tutorial.ipynb https://github.com/ideaconsult/notebooks-ambit/blob/master/enanomapper/summary.ipynb https://github.com/ideaconsult/notebooks-ambit/blob/master/enanomapper/explore.ipynb

Summary charts generated with explore.ipynb

jp1

jp2

Data entry

The data entry for eNanoMapper and the Template Wizard are described in this tutorial.

This guide is available at Help/User guide