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H2020 NANOINFORMATIX


nanoinformatix
Aggregated project database access

Development and Implementation of a Sustainable Modelling Platform for NanoInformatics

http://www.nanoinformatix.eu/

This project has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement 814426 NanoinformaTIX


eNanoMapper database instance

https://apps.ideaconsult.net/nanoinformatix

License: private

nanoinformatix

CBMN HPRT DTT consumption assay Temperature Programmed Surface Reaction (TPSR) Barrier crossing and ICP-MS Buckingham potentials + Wolf summation Nearest neighbour search with cut-off value Calculated values of Hamaker from Butt HJ, Kappl M. Surface and interfacial forces. Weinheim: Wiley-VCH; 2010 anatase at 25 °C, titration. From Ridleay et al., Langmuir, Vol. 22, No. 26, 2006 Docking and MD Simulations (Patchdock and NAMD) c1+c2, c1 and c2 principle curvatures PackMem, during the last 100ns PBE+U DFTB Classical MD, (a) software: GROMACS 2016 Force Field Matsui et al. Umbrella Sampling GROMACS built-in routine SASA Classical MD, software: DL_POLY 4.09+Plumed Force Field Matsui et al. Umbrella Sampling software: AMS, ReaxFF Kim et al., neutral pH, in water, 310 K after annealing up to 1600K 3 FOLD O SUBSURFACE 2 FOLD O BULK EXP BULK PBE DFTB/DFT(B3LYP) VALUE (DFT(B3LYP)) Nitrogen adsorption isotherm Faure et al., Sci. Technol. Adv. Mater., 2013, 14:023001 Z.Zhang et al., Scientific Reports, 2016, 6:34135 Calculated values in water of Hamaker from Butt HJ, Kappl M. Surface and interfacial forces. Weinheim: Wiley-VCH; 2010 Comprehensive Biomaterials II, Elsevier 2017 Docking and MD Simulations (Patchdock and NAMD) software: AMS, ReaxFF, neutral pH, in water, 310 K after annealing up to 1600K Y. Han et al., Water Research 90 (2016) 247e257 from Ellipsometry measurement (T–W) method in water titration Embedded-atom method potentials

nanoreg

MTS CELL VIABILITY ASSAY Impedance adherent cells ALAMAR BLUE Impedance flow cytometry NRU Spectrophotometric Method viability COMET RT-PCR MICRONUCLEUS ASSAY COMET FPG CBMN assay Manual scoring LUCIFER YELLOW Intestinal barrier integrity intestinal barrier integrity SEM-EDX TEM ELISA Annexin V_PI (FACS) Griess Reagent LUMINEX® Reaction Oxygen Species Detection DLS Batch Dispersion Quality supplier WAXS VSSA SUPPLIER TGA Filtration ICP-MS DAPI Hoechst 33342 CELL COUNTER Nuclear Intensity Nuclear area CFE Mitochondrial Membrane Potential dye Lysosomal dye Ki-67 apoptosis cell cycle cleaved caspase-3 Genotoxicity ATM phospho S1981 H2AX phospho S139 p53 phospho s15 Annexin V (Apoptosis) / PI (Necrosis) Nanoparticle tracking Analysis SEM SOP-Toxicity Test with Daphnia magna (without NOM) Weighing Optical Microscope FACS analysis Colorimetric assay Keylab cell counter CCK8 assay Pig-A gene Swiss roll HE-Pycnometer in vitro oral mucosa 3D model Confocal microscopy TEM/STEM SAXS OECD TG487 Alamar blue MTT assay ELISA MULTIPLEX Cytokine release method barrier test May grunwald giemsa coloration of BAL cells cytospin biochemistry automate ICP-MS automatic count WAXD sp_ICP-MS Aerosol Characterisation XRD Dustiness JRCNM01001a ISO 10872:2010 Water QualityDetermination of the toxic effects of sediment and soil samples on growth, fertility and reproduction of Caenorhabditis elegans OECD TG 202 Acute Toxicity OECD TG 201 commercial kits manual count ATR-FTIR HAADF-STEM CHN-analysis ICP-OES Potentiometry PSEUDOKIRCHNERIELLA SUBCAPITATA CLS Colimetry Propidium iodide Manual count /100 cells vibrofluidization Vortex Shaker LDH DCFH2-DA EDX PrestoBlue protocol A13261 TRYPAN BLUE

nanoreg2

COMET ALAMAR BLUE Impedance adherent cells CFE Dot-blot Nanoparticle Tracking Analysis DLS NTA Isothermal Titration Calorimetry (ITC) ZETA POTENTIAL CFDA-AM NRU OECD TG 202 OECD TG 201 EXPOSURE MTS CELL VIABILITY ASSAY Oxiblot® kit, Merck

nanotest

radioactive tag labelling Expression of adhesion molecules flow cytometry DHE DCFH2-DA MTT Assay WST-1 LDH Propidium Iodide uptake IL6, TNF, etc By ELISA immunostaining COMET Cytokinesis Block Micronucleus Cytome (CBMN Cyt) NanoTest FeCell IC Chemical composition of particles HPLC-MS TEM SAD SAED DHE (Dihydroethidium) and Hoechst 33342 ICP-OES fluorescent rhodamine-labeled

enpra

WST-1 LDH ALAMAR BLUE COMET Electron Paramagnetic Resonance (EPR) Fibroblast proliferation

marina

TEER NRU Resazurin LDH CFE Embryonic Stem Cell Test WST-1 ELISA Internalization of latex beads by cells, macrophage activity, inflammation Prothrombotic effects upon systemic administration Differential Centrifugal Sedimentation (DCS) SEM X-ray Photoelectron Spectroscopy (XPS) Electron Paramagnetic Resonance (EPR) TGA ALAMAR BLUE CFDA-AM OECD TG 202 OECD TG 225 OECD TG 217 Plant root length elongation Genotoxicity MICRONUCLEUS ASSAY ICP-MS ICP-OES DLS XRD Porosity OECD TG 210 OECD TG 201 systemic administration

nanogenotox

MICRONUCLEUS ASSAY COMET MLA-TK COMET FPG RICC TCC (Coulter counter) TRYPAN BLUE NRU XTT ICP-OES TEM SAXS TGA autopsy analysis blood kinetics analysis EDS DLS BET animal info Flow cytometry with PI staining XRD

sanowork

MTT Assay ALAMAR BLUE Calcein-Ethidium LDH CFE Cytokinesis Block Micronucleus Cytome (CBMN Cyt) DAN fluorimetric assay ELISA COMET CTA DCFH2-DA GSH MDA Electron Paramagnetic Resonance (EPR) Haemolysis assay TEM/SEM DLS Z-Potential in HAM'S-F12 Z-Potential in Water electroacoustic analysis on naturally concentrated samples Raman Spectroscopy UV TEER X-ray Photoelectron Spectroscopy (XPS) Infrared spectroscopy BET Z-Potential in DMEM

calibrate

CellTiter-Glo (CTG) Automated hematology analyzer Short term oral toxicity Wright-Giemsa modified staining & optical microscopy Plasma (Heparin) Jejunum BAL cell celularity Histopathology COMET MICRONUCLEUS ASSAY AO Fluorescence Hyperspectral image analysis Quantitative PCR EPI-200-SIT OCL-200-EIT TEM DLS Supplier Life-history zFET Acridine Orange (AO) n.a.

cananolab